Getting to Know Bacterial Extracellular Vesicles: Heroes or Villains?

Extracellular Vesicles
Published:
16 Sep 2025
Last edited:
03 Oct 2025
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Explore the dual roles of bacterial extracellular vesicles (BEVs) - from mediating pathogenesis to offering novel therapeutic opportunities.

Could bacterial extracellular vesicles (BEVs) help explain how bacteria survive, spread, and resist treatment? With an estimated 8 million deaths globally due to bacterial infections1, research into these microbes is taking a closer look. BEVs - small, membrane-bound particles released from bacteria, are thought to play a role in bacterial survival, pathogenicity, antibiotic resistance and biofilm formation. These roles make BEVs prime candidates for research and, perhaps, targets for pharmaceutical intervention.  

Yet not all BEVs are harmful. Some play critical roles in regulating the gut barrier and maintaining its microbiome2. Other studies suggest that BEVs could be harnessed as delivery vehicles for vaccines and therapeutics, with applications ranging from inflammatory diseases such as Crohn’s disease to cancer3,4.  

Understanding BEVs’ dual nature raises key questions for research: how can we mitigate their role in infection, and how might we exploit their properties for broader health applications?  

BEV basics: from structure to function

BEV production appears to be universal, despite significant differences in cell structure between bacterial groups that lead to different biogenesis mechanisms. Gram-positive bacteria have a plasma membrane surrounded by a thick peptidoglycan wall, while gram-negative bacteria have an inner and outer membrane with a thin peptidoglycan layer sandwiched in-between (Figure 1). In addition to these structural differences, there are two methods of BEV formation: cell lysis and budding. This combination results in major differences in the structure and contents of BEVs, with half a dozen different types being described in the literature5-7. For example, outer membrane vesicles (OMVs) bud from gram-negative bacteria and contain only periplasmic contents7, whilst explosive cell lysis produces BEVs that contain inner membrane and cytoplasmic components5. Overall, there is huge heterogeneity in the quantity, size, composition and cargo of BEVs both within and between species8,9.  

Figure 1: Differences between the plasma membranes and cell wall of gram-positive and gram-negative bacteria.

Unsurprisingly for such a diverse group, BEVs carry out a wide range of different functions. They remove misfolded proteins9, assist with nutrient acquisition10, facilitate communication with other bacteria11 and even enable communication with other kingdoms of life12. These activities contribute to some of the most harmful effects of bacterial infections, such as protecting and delivering toxins to host cells10. Yet BEVs also provide benefits, including supporting the symbiotic relationship between humans and our gut microbiomes2.  

There are multiple facets of BEVs that make them good candidates for exploitation in therapeutic applications. They are immunogenic but not infectious, are easily produced in a lab, and are relatively easy to modify to present different antigens for vaccines. For example, a hypervesiculating E. coli strain has been engineered with endogenous proteins deleted to make way for higher loading of exogenous antigen, creating a vaccine platform potentially suitable for industrial production13. But perhaps the most extraordinary therapeutic use of BEVs could be as a living biotherapy, where oral administration of engineered bacteria results in therapeutic OMV production in the gut14.

Emerging trends in BEV research: from function to translation

Just like many other areas of EV research, interest in BEVs is growing (Figure 2), a trend that holds even when the overall increase in published papers is accounted for. So, what are the hot topics in BEV research? A recent analysis of literature published on BEVs between 2015-2021 found that the most common aim was to understand BEV function (65%) and by far the most common analyte was BEVs from lab-grown bacterial cultures (94%)15, consistent with a field at the discovery stage. However, the translational potential of this BEV research was impressive, with nearly 20% (167/845) of studies looking at BEVs as a potential vaccine component or therapeutic15. A shift in keyword usage for BEV publications towards applied research terminology, with ‘vaccine’, ‘biomarker’ and ‘drug delivery’ increasingly used16 confirms an emphasis on translating BEV research into real-world applications and, ultimately, improved healthcare outcomes. The best BEV research, it seems, is yet to come.

Figure 2: Number of articles returned by a PubMed search for "bacterial extracellular vesicles" OR "outer membrane vesicles".

Want to learn more about BEVs?

Stay tuned over the next few weeks, as we’ll be releasing a series of articles on key areas of BEV research. Next up: the role of BEVs in antimicrobial resistance. Sign up to our EV newsletter at the bottom of this page to be notified, or take a look at a previous article employing qEV and TRPS technologies to study BEVs: Exploring EVs from a Hospital-Derived Bacterial Pathogen With the Exoid and qEV10

References

/01 GBD 2019 Antimicrobial Resistance Collaborators. Global mortality associated with 33 bacterial pathogens in 2019: a systematic analysis for the Global Burden of Disease Study 2019. Lancet, 400(10369), 2221–2248 (2022). Doi:https://doi.org/10.1016/S0140-6736(22)02185-7

/02 Díaz-Garrido, N. et al. Microbiota-derived extracellular vesicles in interkingdom communication in the gut. Journal of extracellular vesicles, 10(13), e12161 (2021). Doi:https://doi.org/10.1002/jev2.12161  

/03 Shen, Q. et al. Bacterial membrane vesicles in inflammatory bowel disease. Life sciences, 306, 120803 (2022). Doi:https://doi.org/10.1016/j.lfs.2022.120803  

/04 Cheng, K. et al. Bioengineered bacteria-derived outer membrane vesicles as a versatile antigen display platform for tumor vaccination via Plug-and-Display technology. Nature Communications 12, 2041 (2021). Doi:https://doi.org/10.1038/s41467-021-22308-8  

/05 Turnbull, L. et al. Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms. Nature communications, 7, 11220 (2016). Doi:https://doi.org/10.1038/ncomms11220  

/06 Schwechheimer, C. & Kuehn, M. J. Outer-membrane vesicles from Gram-negative bacteria: biogenesis and functions. Nature Reviews Microbiology, 13(10):605–619 (2015). Doi:https://doi.org/10.1038/nrmicro3525

/07 Toyofuku, M. et al. Composition and functions of bacterial membrane vesicles. Nature Reviews Microbiology 21, 415–430 (2023). Doi:https://doi.org/10.1038/s41579-023-00875-5

/08 Kulp, A. & Kuehn, M. J. Biological functions and biogenesis of secreted bacterial outer membrane vesicles. Annual review of microbiology, 64:163–184 (2010). Doi:https://doi.org/10.1146/annurev.micro.091208.073413

/09 McBroom, A. J. & Kuehn, M. J. Release of outer membrane vesicles by Gram-negative bacteria is a novel envelope stress response. Molecular microbiology, 63(2):545–558 (2007). Doi:https://doi.org/10.1111/j.1365-2958.2006.05522.x

/10 Xiu, L. et al. Bacterial membrane vesicles: orchestrators of interkingdom interactions in microbial communities for environmental adaptation and pathogenic dynamics. Frontiers in immunology, 15, 1371317 (2024). Doi:https://doi.org/10.3389/fimmu.2024.1371317  

/11 Mashburn, L. M. & Whiteley, M. Membrane vesicles traffic signals and facilitate group activities in a prokaryote. Nature, 437(7057):422–425 (2005). Doi:https://doi.org/10.1038/nature03925

/12 Ñahui Palomino, R. A. et al. (2021). Microbiota-host communications: Bacterial extracellular vesicles as a common language. PLoS pathogens, 17(5), e1009508. Doi:https://doi.org/10.1371/journal.ppat.1009508  

/13 Zanella, I. et al. (2021). Proteome-minimized outer membrane vesicles from Escherichia coli as a generalized vaccine platform. Journal of extracellular vesicles, 10(4), e12066. Doi:https://doi.org/10.1002/jev2.12066  

/14 Gong, X. et al. Oral delivery of therapeutic proteins by engineered bacterial type zero secretion system. Nature Communications16, 1862 (2025). Doi:https://doi.org/10.1038/s41467-025-57153-6

/15 De Langhe, N. et al. Mapping bacterial extracellular vesicle research: insights, best practices and knowledge gaps. Nature Communications, 15:9410 (2024). Doi:https://doi.org/10.1038/s41467-024-53279-1

/16 Sun, J. X. et al. Translational horizons in bacterial membrane vesicles: Hotspots and frontiers from basic medicine to clinical application by bibliometric analysis. Human Vaccines & Immunotherapeutics, 21(1) (2025). Doi:https://doi.org/10.1080/21645515.2025.2511355

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